Publications

2020
  • Patel D, Shittu TA, Baroncelli R, Muthumeenakshi S, Osborne TH, Janganan TK, and Sreenivasaprasad S*. Genome Sequence of the Biocontrol Agent Coniothyrium minitans strain Conio (IMI 134523). MPMI doi: 10.1094/MPMI-05-20-0124-A
  • Dubrulle G, Picot A, Madec S, Corre E, Pawtowski A, Baroncelli R, Zivy M, Balliau T, Le Floch G, and Pensec F*. Deciphering the infectious process of Colletotrichum lupini in lupin through transcriptomic and proteomic analysis. Microorganisms doi: 10.3390/microorganisms8101621
  • Vicente I*, Baroncelli R, Moran-Diaz ME, Bernardi R, Puntoni G, Hermosa R, Monte E, Vannacci G, Sarrocco S. Combined Comparative Genomics and Gene Expression Analyses Provide Insights into the Terpene Synthases Inventory in Trichoderma. Microorganisms doi: 10.3390/microorganisms8101603
  • Cara M, Mincuzzi A, Merkuri J, Vrapi H, Cara O, Ippolito A, Baroncelli R, Sanzani SM*. Colletotrichum gloeosporioides sensu stricto as causal agent of anthracnose on pomegranate fruit in Albania. Crop protection doi: 10.1016/j.cropro.2020.105291
  • Baroncelli R*, Da Lio D, Vannacci G, Sarrocco S*. Genome Resources for the endophytic fungus Paraphaeosphaeria sporulosa. MPMI doi: 10.1094/MPMI-04-20-0097-A
  • Cafà G, Boufleur TR, Linhares RR, Massola NS Jr, Baroncelli R*. High quality genome sequence of the newly described soybean (Glycine max L.) pathogen Staganosporopsis vannaccii: a reference genome for the genus. MPMI doi: 10.1094/MPMI-01-20-0016-A
  • Rogerio FR, Boufleur TR, Ciampi-Guillardi M, Serenella SA, Thon MR, Massola Junior NS, Baroncelli R*. Genome Sequence Resources of Colletotrichum truncatum, C. plurivorum, C. musicola and sojae: Four Species Pathogenic to Soybean (Glycine max). Phytopathology doi: 10.1094/PHYTO-03-20-0102-A
  • Boufleur TR, Castro LRR, Rogerio FR, Ciampi-Guillardi M*, Baroncelli R, Massola NS Jr. 2020. First report of Colletotrichum musicola causing soybean anthracnose in Brazil. Plant Disease doi: 10.1094/PDIS-12-19-2627-PDN
  • Prusky D, de Assis LJ, Baroncelli R, Chaya T, Covo S, Díaz-Mínguez JM, Donofrio NM, Espeso E, Ribeiro Fernandes TA, Goldman G, Judelson H, Nordzieke D, Di Pietro A, Sionov E, Sukno SA, Thon MR, Todd R, Voll L, Rong Xu J, Horwitz BA and Wilson RA. Nutritional factors modulating plant and fruit susceptibility to pathogens: BARD workshop, Haifa, Israel, February 25–26, 2018. Phytoparasitica doi: 10.1007/s12600-020-00803-w
  • Masi M, Nocera P, Boari A, Zonno MC, Pescitelli G, Sarrocco S, Baroncelli R, Vannacci G, Vurro M, Evidente A. 2020. Secondary metabolites produced by Colletotrichum lupini, the causal agent of anthracnose of lupin (Lupinus). Mycologia accepted doi: 10.1080/00275514.2020.1732148
  • Cafà G, Baroncelli R, Ellison CA, Kurose D. 2020. Impatiens glandulifera (Himalayan balsam) chloroplast genome sequence as a promising target for populations studies. PeerJ doi: 10.7717/peerj.8739
  • Dubrulle G, Pensec F, Picot A, Rigalma K, Pawtowski A, Nicolleau S, Harzic N, Nodet P, Baroncelli R, Le Floch G*. 2020. Phylogenetic Diversity and Effect of Temperature on Pathogenicity of Colletotrichum lupini. Plant Disease doi: 10.1094/PDIS-02-19-0273-RE
2019
  • Crous PW, Wingfield2 MJ, Lombard L, Roets F, Swart WJ, Alvarado P, Carnegie AJ, Moreno G, Luangsa-ard J, Thangavel R, Alexandrova AV Baseia IG, Bellanger JM, Bessette AE, Bessette AR, De la Peña-Lastra S, García D, Gené J, Pham THG, Heykoop M, Malysheva E, Malysheva V, Martín MP, Morozova OV, Noisripoom W, Overton BE, Rea AE, Sewall BJ, Smith ME, Smyth CW, Tasanathai K, Visagie CM, Adamčík S, Alves A, Andrade JP, Aninat MJ, Araújo RVB, Bordallo JJ, Boufleur T, Baroncelli R, Barreto RW, Bolin J, Cabero J, Caboň M, Cafà G, Caffot MLH, Cai L, Carlavilla JR, Chávez R, de Castro RRL, Delgat L, Deschuyteneer D, Dios MM, Domínguez LS, Evans HC, Eyssartier G, Ferreira BW, Figueiredo CN, Liu F, Fournier J, Galli-Terasawa LV, Gil-Durán C, Glienke C, Gonçalves MFM, Gryta H, Guarro J, Himaman W, Hywel-Jones N, Iturrieta-González I, Ivanushkina NE, Jargeat P, Khalid AN, Khan J, Kiran M, Kiss L, Kochkina GA, Kolařík M, Kubátová A, Lodge DJ, Loizides M, Luque D, Manjón JL, Marbach PAS, Massola Jr NS, Mata M, Miller AN, Mongkolsamrit S, Moreau PA, Morte A, Mujic A, Navarro-Ródenas A, Németh MZ, Nóbrega TF, Nováková A, Olariaga I, Ozerskaya SM, Palma MA, Petters-Vandresen DAL, Piontelli E, Popov ES, Rodríguez A, Requejo Ó, Rodrigues ACM, Rong IH, Roux J, Seifert KA, Silva BDB, Sklenář F, Smith JA, Sousa JO, Souza HG, De Souza JT, Švec K, Tanchaud P, Tanney JB, Terasawa F, Thanakitpipattana D, Torres-Garcia D, Vaca I, Vaghefi N, Iperen AL, Vasilenko OV, Verbeken A, Yilmaz N, Zamora JC, Zapata M, Jurjević Ž, Groenewald JZ. 2019. Fungal Planet description sheets: 951–1041. Persoonia 43: 951-1041 doi: 10.3767/persoonia.2019.43.06
  • Kubicek CP, Steindorff A, Chenthamara K, Manganiello G, Henrissat B, Zhang J, Kopchinskiy AG, Kubicek EM, Kuo A, Baroncelli R, Sarrocco S, Noronha EF, Vannacci G, Shen Q, Grigoriev IV, Druzhinina IS*. Evolution and comparative genomics of the most common Trichoderma. BMC Genomics 20(1): 485 doi: 10.1186/s12864-019-5680-7
  • Cuevas-Fernández FB, Robledo-Briones AM, Baroncelli R, Trkulja V, Thon MR, Buhinicek I, Sukno SA*. First Report of Colletotrichum graminicola Causing Maize Anthracnose in Bosnia and Herzegovina. Plant Disease doi: 10.1094/PDIS-06-19-1224-PDN
  • Werbel WA, Baroncelli R, Shoham S, Zhang SX*. Angioinvasive, cutaneous infection due to Colletotrichum siamense in a stem cell transplant recipient: Report and review of prior cases. Transplant Infectious Disease 21 (5), e13153 doi: 10.1111/tid.13153
  • Pecchia S *, Caggiano B, Da Lio D, Cafà G, Le Floch G, Baroncelli R*. Molecular Detection of the Seed-Borne Pathogen Colletotrichum lupini Targeting the Hyper-Variable IGS Region of the Ribosomal Cluster. Plants 8 (7), 222. doi: 10.3390/plants8070222
  • Cobo-Díaz JF*+, Baroncelli R+, Le Floch G, Picot A. A novel metabarcoding approach to investigate the composition of Fusarium species in soil and plant samples. FEMS Microbiology Ecology 95 (7), fiz084 doi: 10.1093/femsec/fiz084
  • Nodet P*, Chalopin M, Crété X, Baroncelli R, Le Floch G. First Report of Colletotrichum fructicola Causing Apple Bitter Rot in Europe. Plant Disease accepted doi: 10.1094/PDIS-11-18-1915-PDN
  • Sarrocco S*, Valenti F, Manfredini S, Esteban P, Bernardi R, Puntoni G, Baroncelli R, Haidukowski M, Moretti A, Vannacci G. Is exploitation competition involved in a multitrophic strategy for the biocontrol of Fusarium Head Blight? Phytopathology 109 (4), 560-570 doi: 10.1094/PHYTO-04-18-0123-R
  • Cobo-Díaz JF, Baroncelli R, Le Floch G, Picot A*. Bacterial, fungal and Fusarium communities in maize stalks: combined metabarcoding and co-occurrence network analysis as an initial strategy for screening potential antagonists. Frontiers in Microbiology 10: 261 doi: 10.3389/fmicb.2019.00261
  • Vicente Munoz I, Sarrocco S*, Malfatti L, Baroncelli R, Vannacci G. CRISPR-Cas for fungal genome editing: a new tool for the management of plant diseases. Frontiers in Plant Science 10: 135 doi: 10.3389/fpls.2019.00135
2018
  • Da Lio D, Cobo-Díaz JF, Masson C, Chalopin M, Kebe D, Giraud M, Verhaeghe A, Nodet P, Sarrocco S, Le Floch G, Baroncelli R*. Combined Metabarcoding and Multi-locus approach for Genetic characterization of Colletotrichum species associated with common walnut (Juglans regia) anthracnose in France. Scientific Reports 8(1): 10765 doi: 10.1038/s41598-018-29027-z
  • Ruocco M*, Baroncelli R, Cacciola SO, Pane C, Monti MM, Firrao G, Vergara M, Magnano di San Lio G, Vannacci G, Scala F. Polyketide synthases of Diaporthe helianthi and involvement of DhPKS1 in virulence on sunflower. BMC Genomics 19(1): 27 doi: 10.1186/s12864-017-4405-z
  • R Baroncelli*, S Sukno, S Sarrocco, G Cafà, G Le Floch, MR Thon*. Whole-genome sequence of the orchid anthracnose pathogen Colletotrichum orchidophilum. Molecular Plant-Microbe Interactions 31 (10), 979-981 doi: 10.1094/MPMI-03-18-0055-A
  • BF Almiman, TA Shittu, S Muthumeenakshi, R Baroncelli, S Sreenivasaprasad*. Genome Sequence of the Mycotoxigenic Crop Pathogen Fusarium proliferatum Strain ITEM 2341 from Date Palm. Microbiological Resource Announcements 7:e00964-18. doi: 10.1128/MRA.00964-18
  • Bedini S, Sarrocco S, Baroncelli R, Vannacci G, Conti B. Pathogenic potential of Beauveria pseudobassiana as bioinsecticide in protein baits for the control of the medfly Ceratitis capitata. Bulletin of Insectology 71(1): 31-38
2017
  • Baroncelli R, Talhinhas P*, Pensec F, Sukno S, Le Floch G, Thon M. The Colletotrichum acutatum species complex as a model system to study evolution and host specialization in plant pathogens. Frontiers in Microbiology 8: 2011 doi: 10.3389/fmicb.2017.02001
  • Zapparata A*, Da Lio D, Somma S, Vicente Muñoz I, Malfatti L, Vannacci G, Moretti A, Baroncelli R, Sarrocco S. Genome sequence of Fusarium graminearum ITEM 124 (ATCC 1 56091), a mycotoxigenic plant pathogen. Genome announcements 5(45): e01209-17 doi: 10.1128/genomeA.01209-17
  • Da Lio D, Baroncelli R, Weill A, Le Floch G, Nodet P*. First report of pear bitter rot caused by Colletotrichum fioriniae in France. Plant Disease 101(7): 1319 doi: 10.1094/PDIS-01-17-0129-PDN
  • Sarrocco S*, Matarese F, Baroncelli R, Vannacci G, Seidl-Seiboth V, Kubicek CP, Vergara M. The constitutive endopolygalacturonase TVPG2 regulates the induction of plant resistance by Trichoderma virens. Phytopathology 107(5): 537-544 doi: 10.1094/PHYTO-03-16-0139-R
  • Masi M, Cimmino A, Boari A, Tuzi A, Zonno MC, Baroncelli R, Vurro M, Evidente A*. Colletochlorins E and F, New Phytotoxic Tetrasubstituted Pyran-2-one and Dihydrobenzofuran, Isolated from Colletotrichum higginsianum with Potential Herbicidal Activity. Journal of Agricultural and Food Chemistry 65(6): 1124-1130 doi: 10.1021/acs.jafc.6b05193
  • Garnier L, Valence F, Pawtowski A, Auhustsinava-Galerne L, Nicolas Frotté, Baroncelli R, Deniel F, Coton E, Mounier J*. Diversity of spoilage fungi associated with various French dairy products. International Journal of Food Microbiology 241: 191-197 doi: 10.1016/j.ijfoodmicro.2016.10.026
  • Zapparata A*, Da Lio D, Sarrocco S, Vannacci G, Baroncelli R. First report of Colletotrichum godetiae causing grape (Vitis vinifera) berry rot in Italy. Plant Disease 101(6): 1051 doi: 10.1094/PDIS-12-16-1764-PDN
2016
  • Baroncelli R*, Amby DB, Zapparata A, Sarrocco S, Vannacci G, Le Floch G, Harrison RJ, Holub E, Sukno SA, Sreenivasaprasad S, Thon MR*. Gene family expansions and contractions are associated with host range in plant pathogens of the genus Colletotrichum. BMC Genomics 17: 555 doi: 10.1186/s12864-016-2917-6
  • Baroncelli R, Scala F, Vergara M, Thon MR, Ruocco M*. Draft whole-genome sequence of the Diaporthe helianthi 7/96 strain, causal agent of sunflower stem canker. Genomics Data 10: 151-152 doi: 10.1016/j.gdata.2016.11.005
  • Talhinas P, Baroncelli R*, Le Floch G. Anthracnose of lupins caused by Colletotrichum lupini: a recent disease and a successful worldwide pathogen. Journal of Plant Pathology 98(1): 5-14 doi: 10.4454/JPP.V98I1.040
  • Nodet P, Baroncelli R, Faugère D, Le Floch G*. First report of apple bitter rot caused by Colletotrichum fioriniae in Brittany, France. Plant Disease 100(7): 1497 doi: 10.1094/PDIS-11-15-1353-PDN
  • Bragança CAD, Damm U, Baroncelli R, Massola Júnior NS, Crous PW*. Species of the Colletotrichum acutatum complex associated with anthracnose diseases of fruit in Brazil. Fungal Biology 120(4): 547–561 doi: 10.1016/j.funbio.2016.01.011
  • Baroncelli R, Zapparata A, Piaggeschi G, Sarrocco S* and Vannacci G. Draft Whole-Genome Sequence of Trichoderma gamsii T6085, a Promising Biocontrol Agent of Fusarium Head Blight on Wheat. Genome Announcement 4(1): e01747-15 doi: 10.1128/genomeA.01747-15
  • Cimmino A, Mathieu V, Masi M, Baroncelli R, Boari A, Pescitelli G, Ferderin M, Lisy R, Evidente M, Tuzi A, Zonno MC, Kornienko A, Kiss R and Evidente A*. Higginsianins A and B, Two Diterpenoid α-Pyrones Produced by Colletotrichum higginsianum, with in Vitro Cytostatic Activity.  Journal of Natural Products 79(1): 116-25 doi: 10.1021/acs.jnatprod.5b00779
  • Baroncelli R, Matarese F, Moncini L, Vannacci G and Vergara M*. Two endopolygalacturonase genes in Trichoderma virens: in silico characterisation and expression during interaction with plants. Journal of Phytopathology 164(1): 18-28 doi: 10.1111/jph.12414
2015
  • S Sarrocco*, S Diquattro R Baroncelli, A Cimmino, A Evidente, G Vannacci and F Doveri. A polyphasic contribution to the knowledge of Auxarthron (Onygenaceae). Mycological Progress 14(11): 1-20 doi: 10.1007/s11557-015-1128-x
  • Baroncelli R, Piaggeschi G, Fiorini L, Bertolini E, Zapparata A, Pè ME, Sarrocco S* and Vannacci G. Draft whole-genome sequence of the biocontrol agent Trichoderma harzianum. Genome Announcements 3(3): 00647-15 doi: 10.1128/genomeA.00647-15
  • Baroncelli R*, Zapparata A, Sarrocco S, Sukno SA, Lane CR, Thon MR, Vannacci G, Holub E and Sreenivasaprasad S. Molecular diversity of anthracnose pathogen populations associated with UK strawberry production suggests multiple introductions of three different Colletotrichum species. PLOS ONE 10(6): e0129140 doi: 10.1371/journal.pone.0129140
  • Baroncelli R*, Sarrocco S, Zapparata A, Tavarini S, Angelini LG and Vannacci G. Characterisation and epidemiology of Colletotrichum acutatum sensu lato causing Carthamus tinctorius anthracnose. Plant Pathology 64(2): 375-384 doi: 10.1111/ppa.12268
2014
  • Baroncelli R, Sanz-Martín JM, Rech GE, Sukno SA and Thon MR*. Draft Genome Sequence of Colletotrichum sublineola: a destructive pathogen of cultivated sorghum. Genome Announcements 2(3): e00540-14 doi: 10.1128/genomeA.00540-14
  • Baroncelli R*, Sreenivasaprasad S, Lane CR, Thon MR and Sukno SA. First report of Colletotrichum acutatum sensu lato causing anthracnose on Vitis vinifera in UK. New Disease Report 29: 26 doi: 10.5197/j.2044-0588.2014.029.026
  • Baroncelli R*, Sreenivasaprasad S, Sukno SA, Thon MR and Holub E. Draft Genome Sequence of Colletotrichum acutatum sensu lato (Colletotrichum fioriniae). Genome Announcements 2(2): e00112-14 doi: 10.1128/genomeA.00112-14
  • Baroncelli R*, Sreenivasaprasad S, Thon MR and Sukno SA. First report of apple bitter rot caused by Colletotrichum godetiae in the UK. Plant Disease 98(7): 1000 doi: 10.1094/PDIS-11-13-1177-PDN
< 2013
  • Porri A, Baroncelli R, Guglielminetti L, Sarrocco S, Guazzelli L, Forti M, Catelani G, Valentini G, Bazzichi A, Franceschi M and Vannacci G*Fusarium oxysporum degradation and detoxification of a new textile-glycoconjugate azo dye (GAD).  Fungal Biology 115: 30-37 doi: 10.1016/j.funbio.2010.10.001
  • Damm U*, Baroncelli R, Cai L, Kubo Y, O’Connell R, Weir B, Yoshino K and Cannon PF. Colletotrichum: species, ecology and interactions. IMA Fungus 1: 161-165 doi: 10.5598/imafungus.2010.01.02.08